Basic Information
Locus ID:
gene-LOC132620297
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 6174279 | 6182804 | + | gene-LOC132620297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 95,258.18 Da | 57.66 | 80.20 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 713 | 748 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 629 | 664 | 2.0E-4 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 82 | 314 | 3.53E-17 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 540 | 850 | 1.44E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 516 | 853 | 8.7E-121 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 82 | 324 | 2.3E-22 | - |
| SMART | SM00320 | WD40_4 | 536 | 571 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 667 | 706 | 0.68 | IPR001680 |
| SMART | SM00320 | WD40_4 | 710 | 748 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 582 | 621 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 624 | 664 | 8.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 757 | 796 | 13.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 631 | 668 | 10.337415 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 631 | 673 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 717 | 750 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 315 | 11.015347 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 717 | 750 | 10.337415 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 735 | 749 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 651 | 665 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 651 | 665 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 735 | 749 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 608 | 622 | 1.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 499 | - | - |
| Coils | Coil | Coil | 192 | 212 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_009604688.1 | protein SPA1-RELATED 4-like isoform X1 [Nicotiana tomentosiformis] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3XSE1 | protein SPA1-RELATED 4-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107768013 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology