Basic Information
Locus ID:
gene-LOC132620071
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 106302572 | 106317107 | - | gene-LOC132620071 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 96,933.17 Da | 39.83 | 112.94 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 215 | 272 | 5.5E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 607 | 666 | 4.0E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 535 | 556 | 1.7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 727 | 749 | 0.13 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 215 | 517 | 2.04E-52 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 453 | 792 | 2.12E-56 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 97 | 202 | 7.99E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 450 | 521 | 8.9E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 99 | 210 | 1.2E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 522 | 823 | 8.2E-79 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 211 | 449 | 5.0E-61 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 259 | 285 | 540.0 | - |
| SMART | SM00369 | LRR_typ_2 | 725 | 748 | 150.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 332 | 355 | 60.0 | - |
| SMART | SM00369 | LRR_typ_2 | 501 | 524 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 653 | 677 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 453 | 477 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 605 | 628 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 629 | 652 | 16.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 453 | 474 | 230.0 | - |
| SMART | SM00369 | LRR_typ_2 | 308 | 332 | 13.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 356 | 382 | 5.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 605 | 631 | 210.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 677 | 700 | 200.0 | - |
| SMART | SM00369 | LRR_typ_2 | 259 | 283 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 163 | 187 | 12.0 | IPR003591 |
| Coils | Coil | Coil | 1 | 37 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47110.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_015163933.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Solanum tuberosum] | 0 |
| TrEMBL | M1C6B0 | Serine-threonine protein kinase, plant-type OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 10 | gene-LOC132613285, gene-LOC132613458, gene-LOC132613462 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004842000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016360, gene-LOC107024787 |