Basic Information
Locus ID:
gene-LOC132619740
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 37162602 | 37179593 | + | gene-LOC132619740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 91,740.41 Da | 40.75 | 86.41 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 459 | 657 | 2.39126E-136 | - |
| CDD | cd18787 | SF2_C_DEAD | 668 | 797 | 4.30173E-58 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 480 | 641 | 1.4E-39 | IPR011545 |
| Pfam | PF00400 | WD domain, G-beta repeat | 193 | 227 | 3.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 250 | 276 | 0.088 | IPR001680 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 681 | 789 | 3.0E-28 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 524 | 809 | 6.1E-74 | IPR027417 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 45 | 345 | 5.49E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 155 | 350 | 1.6E-24 | IPR015943 |
| Gene3D | G3DSA:3.40.50.300 | - | 664 | 828 | 5.4E-57 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 143 | 2.5E-7 | IPR015943 |
| Gene3D | G3DSA:3.40.50.300 | - | 445 | 663 | 2.1E-66 | IPR027417 |
| SMART | SM00320 | WD40_4 | 150 | 185 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 17 | 62 | 280.0 | IPR001680 |
| SMART | SM00487 | ultradead3 | 474 | 671 | 7.6E-58 | IPR014001 |
| SMART | SM00320 | WD40_4 | 230 | 276 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 188 | 227 | 9.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 79 | 120 | 0.12 | IPR001680 |
| SMART | SM00490 | helicmild6 | 708 | 789 | 1.6E-30 | IPR001650 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 195 | 232 | 10.390142 | - |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 486 | 656 | 29.867989 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 455 | 483 | 10.529004 | IPR014014 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 195 | 236 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 667 | 828 | 25.337582 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 602 | 610 | - | IPR000629 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 214 | 228 | - | IPR019775 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_034699420.1 | uncharacterized protein LOC117924822 [Vitis riparia] | 0 |
| Q40471 | Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P9ESY1 | eukaryotic initiation factor 4A-15-like OS=Juglans regia OX=51240 GN=LOC109009115 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology