halophFGD

Basic Information

Locus ID: gene-LOC132619608

Species & Taxonomic ID: Lycium barbarum & 112863

Genome Assembly: GCF_019175385.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	25913519	25914496	-	gene-LOC132619608

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.62	36,981.93 Da	40.55	64.83	-0.98

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14111	Domain of unknown function (DUF4283)	2	75	5.7E-12	IPR025558
MobiDBLite	mobidb-lite	consensus disorder prediction	140	218	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	194	218	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	275	325	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	140	184	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	276	290	-	-
Coils	Coil	Coil	133	155	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_019252645.1	PREDICTED: uncharacterized protein LOC109231437 [Nicotiana attenuata]	0
TrEMBL	A0A1U7Y6Q5	uncharacterized protein LOC104241685 OS=Nicotiana sylvestris OX=4096 GN=LOC104241685 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.681.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g04130
Solanaceae	Lycium barbarum	44	gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... gene-LOC132601883, gene-LOC132601893, gene-LOC132601922, gene-LOC132606002, gene-LOC132607734, gene-LOC132609505, gene-LOC132610402, gene-LOC132611827, gene-LOC132612098, gene-LOC132612101, gene-LOC132612132, gene-LOC132612161, gene-LOC132612301, gene-LOC132612811, gene-LOC132612943, gene-LOC132613748, gene-LOC132615817, gene-LOC132617405, gene-LOC132619559, gene-LOC132619608, gene-LOC132620049, gene-LOC132623978, gene-LOC132624193, gene-LOC132624351, gene-LOC132624353, gene-LOC132624363, gene-LOC132628281, gene-LOC132628294, gene-LOC132628470, gene-LOC132629150, gene-LOC132631066, gene-LOC132631437, gene-LOC132631524, gene-LOC132631534, gene-LOC132637239, gene-LOC132637284, gene-LOC132639155, gene-LOC132639331, gene-LOC132639829, gene-LOC132643879, gene-LOC132644615
Solanaceae	Solanum chilense	37	SOLCI000177100, SOLCI000563900, SOLCI001032000 ... SOLCI001267600, SOLCI001302000, SOLCI001561300, SOLCI001623700, SOLCI001652900, SOLCI002142100, SOLCI002298300, SOLCI002435500, SOLCI002634400, SOLCI002750700, SOLCI003008500, SOLCI003121300, SOLCI003335900, SOLCI003420000, SOLCI003569900, SOLCI003899300, SOLCI003914900, SOLCI004089200, SOLCI004107200, SOLCI004164900, SOLCI004492500, SOLCI004715900, SOLCI004719400, SOLCI004929300, SOLCI004976100, SOLCI005111200, SOLCI005325900, SOLCI005500300, SOLCI006148400, SOLCI006625600, SOLCI006891100, SOLCI007303800, SOLCI007398600, SOLCI007411400
Solanaceae	Solanum pennellii	3	gene-LOC107022842, gene-LOC114076821, gene-LOC114077933