Basic Information
Locus ID:
gene-LOC132619582
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
COPG
Description:
intracellular protein transport
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 24590910 | 24592491 | + | gene-LOC132619582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 42,989.25 Da | 36.56 | 78.80 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04476 | RPA1_DBD_C | 106 | 268 | 3.37035E-29 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 121 | 256 | 2.3E-16 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 8 | 76 | 6.28E-5 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 98 | 266 | 1.49E-30 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 92 | 267 | 6.5E-38 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 3 | 82 | 9.0E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 324 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015087119.1 | replication factor A protein 1-like [Solanum pennellii] | 0 |
| TrEMBL | A0A1S3ZFB7 | uncharacterized protein LOC107786203 OS=Nicotiana tabacum OX=4097 GN=LOC107786203 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology