Basic Information
Locus ID:
gene-LOC132619581
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 24530319 | 24530981 | - | gene-LOC132619581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 22,293.74 Da | 71.04 | 62.00 | -0.97 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 141 | 183 | 1.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 188 | 1.03E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 187 | 7.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 142 | 182 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 142 | 183 | 13.374458 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 71 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G45180.2 | - | 0 |
| RefSeq | XP_049347424.1 | probable E3 ubiquitin-protein ligase ZFP1 [Solanum verrucosum] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | M1AD60 | C-terminal zinc-finger OS=Solanum tuberosum OX=4113 GN=102584950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg13039 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g21230 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00028652, Pov_00033909, Pov_00033910 |
| Solanaceae | Lycium barbarum | 7 | gene-LOC132619581, gene-LOC132637834, gene-LOC132637850 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI000413600, SOLCI002808400, SOLCI003913300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107005954, gene-LOC107022247, gene-LOC114075203 |