halophFGD

Basic Information

Locus ID: gene-LOC132619559

Species & Taxonomic ID: Lycium barbarum & 112863

Genome Assembly: GCF_019175385.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	22476438	22478718	-	gene-LOC132619559

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.90	69,153.20 Da	49.89	60.65	-1.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14111	Domain of unknown function (DUF4283)	2	93	2.9E-22	IPR025558
SUPERFAMILY	SSF56219	DNase I-like	470	564	2.08E-12	IPR036691
Gene3D	G3DSA:3.60.10.10	Endonuclease/exonuclease/phosphatase	451	566	4.2E-11	IPR036691
MobiDBLite	mobidb-lite	consensus disorder prediction	349	377	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	148	199	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	148	278	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	226	255	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	315	348	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	256	278	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	292	377	-	-
Coils	Coil	Coil	342	369	-	-
Coils	Coil	Coil	145	168	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_033516369.1	uncharacterized protein LOC104112999 [Nicotiana tomentosiformis]	0
TrEMBL	A0A1S4D6Z5	uncharacterized protein LOC107826630 OS=Nicotiana tabacum OX=4097 GN=LOC107826630 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.681.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g04130
Solanaceae	Lycium barbarum	44	gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... gene-LOC132601883, gene-LOC132601893, gene-LOC132601922, gene-LOC132606002, gene-LOC132607734, gene-LOC132609505, gene-LOC132610402, gene-LOC132611827, gene-LOC132612098, gene-LOC132612101, gene-LOC132612132, gene-LOC132612161, gene-LOC132612301, gene-LOC132612811, gene-LOC132612943, gene-LOC132613748, gene-LOC132615817, gene-LOC132617405, gene-LOC132619559, gene-LOC132619608, gene-LOC132620049, gene-LOC132623978, gene-LOC132624193, gene-LOC132624351, gene-LOC132624353, gene-LOC132624363, gene-LOC132628281, gene-LOC132628294, gene-LOC132628470, gene-LOC132629150, gene-LOC132631066, gene-LOC132631437, gene-LOC132631524, gene-LOC132631534, gene-LOC132637239, gene-LOC132637284, gene-LOC132639155, gene-LOC132639331, gene-LOC132639829, gene-LOC132643879, gene-LOC132644615
Solanaceae	Solanum chilense	37	SOLCI000177100, SOLCI000563900, SOLCI001032000 ... SOLCI001267600, SOLCI001302000, SOLCI001561300, SOLCI001623700, SOLCI001652900, SOLCI002142100, SOLCI002298300, SOLCI002435500, SOLCI002634400, SOLCI002750700, SOLCI003008500, SOLCI003121300, SOLCI003335900, SOLCI003420000, SOLCI003569900, SOLCI003899300, SOLCI003914900, SOLCI004089200, SOLCI004107200, SOLCI004164900, SOLCI004492500, SOLCI004715900, SOLCI004719400, SOLCI004929300, SOLCI004976100, SOLCI005111200, SOLCI005325900, SOLCI005500300, SOLCI006148400, SOLCI006625600, SOLCI006891100, SOLCI007303800, SOLCI007398600, SOLCI007411400
Solanaceae	Solanum pennellii	3	gene-LOC107022842, gene-LOC114076821, gene-LOC114077933