Basic Information
Locus ID:
gene-LOC132619231
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 32727810 | 32741089 | + | gene-LOC132619231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 44,997.05 Da | 39.82 | 68.23 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 254 | 328 | 7.67106E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 134 | 208 | 2.81886E-50 | - |
| CDD | cd12352 | RRM1_TIA1_like | 50 | 120 | 3.92352E-37 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 135 | 205 | 2.7E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 256 | 322 | 1.1E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 50 | 116 | 6.3E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 47 | 212 | 8.11E-45 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 240 | 332 | 5.37E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 130 | 4.2E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 131 | 212 | 1.8E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 232 | 333 | 4.6E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 134 | 207 | 9.6E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 49 | 118 | 2.3E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 255 | 324 | 5.8E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 254 | 328 | 14.982202 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 48 | 122 | 15.425642 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 133 | 211 | 16.755964 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 250 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_019232386.1 | PREDICTED: oligouridylate-binding protein 1-like [Nicotiana attenuata] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2AJB5 | Oligouridylate-binding protein 1-like OS=Solanum chilense OX=4083 GN=EJD97_005501 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology