Basic Information
Locus ID:
gene-LOC132619127
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ABC transporter C family member 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2421571 | 2427970 | + | gene-LOC132619127 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 167,102.17 Da | 33.70 | 103.65 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 310 | 597 | 1.00338E-102 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 931 | 1225 | 3.56625E-93 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1248 | 1468 | 1.31403E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 623 | 823 | 1.14421E-91 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 966 | 1177 | 1.0E-30 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 309 | 576 | 1.1E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1268 | 1415 | 2.5E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 641 | 775 | 1.9E-19 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1242 | 1482 | 2.95E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 300 | 608 | 5.76E-34 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 621 | 845 | 3.18E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 932 | 1232 | 2.22E-52 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 897 | 1231 | 7.1E-60 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1233 | 1486 | 1.3E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 289 | 605 | 1.3E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 607 | 866 | 1.8E-74 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1276 | 1461 | 1.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 650 | 823 | 5.1E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 309 | 589 | 32.776333 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1250 | 1484 | 17.767239 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 623 | 846 | 22.61582 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 933 | 1213 | 36.052448 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 748 | 762 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_019230852.1 | PREDICTED: ABC transporter C family member 3 [Nicotiana attenuata] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A314KK22 | ABC-type xenobiotic transporter OS=Nicotiana attenuata OX=49451 GN=ABCC3_0 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology