Basic Information
Locus ID:
gene-LOC132618905
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 96161869 | 96165786 | - | gene-LOC132618905 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 121,488.56 Da | 34.84 | 98.18 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 853 | 1121 | 1.35469E-87 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 71 | 6.7E-13 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 634 | 692 | 1.5E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 850 | 1047 | 7.5E-43 | IPR000719 |
| Pfam | PF13516 | Leucine Rich repeat | 417 | 433 | 0.93 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 176 | 214 | 5.0E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 335 | 5.87E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 828 | 1119 | 6.07E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 296 | 462 | 2.21E-19 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 537 | 742 | 1.59E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 101 | 5.3E-11 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 923 | 1122 | 4.8E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 347 | 471 | 2.3E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 253 | 346 | 1.8E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 108 | 252 | 9.9E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 497 | 747 | 7.4E-53 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 809 | 922 | 3.2E-27 | - |
| SMART | SM00369 | LRR_typ_2 | 179 | 203 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 300 | 324 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 227 | 251 | 310.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 847 | 1121 | 2.8E-32 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 607 | 631 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 655 | 678 | 390.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 155 | 178 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 679 | 702 | 190.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 847 | 1121 | 38.929996 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 967 | 979 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 853 | 875 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 655 | 668 | 5.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 421 | 434 | 5.0E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 775 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.2 | - | 0 |
| RefSeq | NP_001310364.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Solanum pennellii] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | F8WS91 | Leucine rich repeat receptor protein kinase 2 OS=Solanum peruvianum OX=4082 GN=SprRPK2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology