Basic Information
Locus ID:
gene-LOC132618795
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD repeat-containing protein 26-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 26883525 | 26896575 | - | gene-LOC132618795 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 66,263.00 Da | 39.89 | 94.57 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 266 | 557 | 9.95575E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 299 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 345 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 514 | 0.0071 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 557 | 3.1E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 557 | 7.63E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 256 | 521 | 7.1E-57 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 578 | 3.7E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 473 | 515 | 0.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 2.6E-7 | IPR001680 |
| SMART | SM00668 | ctlh | 95 | 152 | 2.8E-6 | IPR006595 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 469 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 558 | 5.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 0.027 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 8.491517 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 560 | 11.89286 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 350 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 302 | 10.68014 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 95 | 152 | 10.636038 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 302 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 560 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 14.184453 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 502 | 516 | 5.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 5.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 545 | 559 | 5.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_015081933.1 | WD repeat-containing protein 26 homolog [Solanum pennellii] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3Q7HA44 | WD repeat-containing protein 26-like OS=Solanum lycopersicum OX=4081 GN=101248217 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology