Basic Information
Locus ID:
gene-LOC132618366
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 24855735 | 24857231 | + | gene-LOC132618366 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 43,831.54 Da | 33.73 | 89.58 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 195 | 324 | 6.5E-13 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 32 | 112 | 8.8E-7 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 27 | 170 | 2.22E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 177 | 325 | 4.32E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 20 | 166 | 2.2E-10 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 167 | 325 | 5.6E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 221 | 325 | 1.6E-14 | IPR000782 |
| SMART | SM00554 | fasc_3 | 57 | 172 | 0.58 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 182 | 322 | 12.24151 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 21 | 169 | 11.093836 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 376 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_006357643.1 | PREDICTED: fasciclin-like arabinogalactan protein 2 [Solanum tuberosum] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | M1BGM9 | Fasciclin-like arabinogalactan protein 19 OS=Solanum tuberosum OX=4113 GN=102596805 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology