Basic Information
Locus ID:
gene-LOC132618246
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 122139956 | 122152439 | - | gene-LOC132618246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 118,023.85 Da | 34.44 | 91.62 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 721 | 957 | 6.7E-30 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 197 | 217 | 1.8 | IPR001611 |
| Pfam | PF11721 | Malectin domain | 471 | 651 | 9.7E-34 | IPR021720 |
| Pfam | PF00560 | Leucine Rich Repeat | 122 | 143 | 0.81 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 245 | 303 | 1.1E-6 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 101 | 421 | 2.12E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 701 | 1019 | 2.47E-54 | IPR011009 |
| Gene3D | G3DSA:2.60.120.430 | - | 470 | 657 | 2.4E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 835 | 1031 | 1.1E-41 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 684 | 789 | 8.4E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 67 | 173 | 9.6E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 174 | 437 | 9.6E-56 | IPR032675 |
| SMART | SM00220 | serkin_6 | 718 | 1024 | 6.0E-11 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 195 | 219 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 119 | 142 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 243 | 266 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 267 | 290 | 68.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 363 | 387 | 66.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 718 | 1019 | 30.181049 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 879 | 891 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53440.1 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_047266493.1 | probable LRR receptor-like serine/threonine-protein kinase At1g53420 isoform X2 [Capsicum annuum] | 0 |
| C0LGG9 | Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana OX=3702 GN=At1g53440 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2G2WW30 | Protein kinase domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_09213 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Salicaceae | Populus euphratica | 1 | populus_peu09879 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616834, gene-LOC132618246 |
| Solanaceae | Solanum chilense | 1 | SOLCI006585800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014596 |