Basic Information
Locus ID:
gene-LOC132618056
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 118731216 | 118743565 | + | gene-LOC132618056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 145,585.42 Da | 46.24 | 79.61 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 594 | 916 | 3.43016E-82 | - |
| CDD | cd18793 | SF2_C_SNF | 1167 | 1275 | 1.04375E-51 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1165 | 1265 | 1.5E-14 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1032 | 1069 | 1.8E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 610 | 993 | 3.7E-65 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1029 | 1081 | 1.21E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 577 | 916 | 3.1E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 924 | 1322 | 4.83E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 779 | 917 | 5.1E-28 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 568 | 658 | 1.2E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 931 | 1323 | 3.3E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 686 | 773 | 2.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1026 | 1083 | 1.2E-10 | IPR013083 |
| SMART | SM00490 | helicmild6 | 1182 | 1265 | 4.5E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 590 | 893 | 3.1E-28 | IPR014001 |
| SMART | SM00184 | ring_2 | 1032 | 1070 | 1.7E-4 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 609 | 878 | 13.306976 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1157 | 1318 | 14.248459 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1032 | 1069 | 10.6304 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1047 | 1056 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 789 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1140 | 1162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 806 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1148 | 1162 | - | - |
| Coils | Coil | Coil | 796 | 816 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_006343255.1 | PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 isoform X2 [Solanum tuberosum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3Q7FFP6 | Helicase-like transcription factor CHR28 OS=Solanum lycopersicum OX=4081 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology