Basic Information
Locus ID:
gene-LOC132617965
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 121661344 | 121665466 | + | gene-LOC132617965 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 36,157.88 Da | 20.67 | 62.01 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 209 | 262 | 1.28651E-12 | - |
| Pfam | PF12906 | RING-variant domain | 209 | 261 | 4.8E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 264 | 1.8E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 194 | 273 | 3.5E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 208 | 262 | 3.9E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 201 | 268 | 18.42111 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_004234082.1 | uncharacterized protein LOC101249331 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A0V0HNM8 | Putative E3 ubiquitin-protein ligase MARCH8-like OS=Solanum chacoense OX=4108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology