Basic Information
Locus ID:
gene-LOC132617794
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 16108961 | 16111787 | - | gene-LOC132617794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 57,868.96 Da | 49.48 | 102.55 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07723 | Leucine Rich Repeat | 194 | 218 | 4.2E-6 | IPR013101 |
| Pfam | PF00646 | F-box domain | 32 | 68 | 9.0E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 173 | 317 | 5.69E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 29 | 100 | 1.1E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 126 | 473 | 1.2E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 72 | 4.7E-6 | - |
| SMART | SM00256 | fbox_2 | 36 | 77 | 0.0041 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22700.6 | - | 0 |
| RefSeq | XP_016579465.2 | F-box/FBD/LRR-repeat protein At5g22700 [Capsicum annuum] | 0 |
| Q9FNJ1 | F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana OX=3702 GN=At5g22700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U8H7Z9 | F-box/FBD/LRR-repeat protein At5g22700-like OS=Capsicum annuum OX=4072 GN=LOC107877306 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 6 | gene-LOC132612692, gene-LOC132617794, gene-LOC132619153 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002523600, SOLCI002523700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107025266, gene-LOC107025267, gene-LOC107025498 |