Basic Information
Locus ID:
gene-LOC132617321
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 718706 | 724445 | + | gene-LOC132617321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 45,050.21 Da | 37.95 | 92.55 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 63 | 383 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 66 | 328 | 3.9E-118 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 64 | 327 | 4.07E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 328 | 384 | 4.58E-17 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 93 | 393 | 5.9E-103 | IPR027417 |
| SMART | SM00382 | AAA_5 | 115 | 286 | 1.3E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 63 | 383 | 7.0E-143 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 257 | 332 | 28.336624 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 94 | 252 | 28.548044 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 271 | 279 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 357 | 374 | 3.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 303 | 332 | 3.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 185 | 214 | 3.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 223 | 252 | 3.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 268 | 296 | 3.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 151 | 180 | 3.1E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 64 | 389 | 45.117878 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_006346054.1 | PREDICTED: DNA repair protein recA homolog 1, chloroplastic [Solanum tuberosum] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | M1C030 | Replicase OS=Solanum tuberosum OX=4113 GN=102585921 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology