Basic Information
Locus ID:
gene-LOC132617149
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 5899743 | 5907393 | + | gene-LOC132617149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 98,815.60 Da | 42.51 | 68.29 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 510 | 545 | 1.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 406 | 435 | 4.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 551 | 588 | 8.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 685 | 723 | 0.0044 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 400 | 726 | 9.57E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 487 | 750 | 2.9E-49 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 295 | 474 | 7.3E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 591 | 629 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 546 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 549 | 588 | 2.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 682 | 723 | 0.078 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 436 | 4.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 636 | 681 | 3.4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 555 | 589 | 10.390142 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 515 | 549 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 555 | 589 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 404 | 441 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 515 | 555 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 404 | 445 | 12.480124 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 423 | 437 | 4.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 575 | 589 | 4.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 533 | 547 | 4.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 330 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_015082685.1 | WD repeat-containing protein 44 [Solanum pennellii] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AUF1 | WD repeat-containing protein 44-like OS=Solanum chilense OX=4083 GN=EJD97_023239 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology