Basic Information
Locus ID:
gene-LOC132616981
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ATP-dependent RNA helicase-like protein DB10 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 71333417 | 71350009 | + | gene-LOC132616981 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.67 | 63,677.00 Da | 48.82 | 73.31 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 14 | 43 | 5.48193E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 337 | 466 | 1.3523E-62 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 142 | 311 | 3.9E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 349 | 457 | 2.8E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 190 | 473 | 5.7E-73 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 4 | 44 | 5.88E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 329 | 499 | 1.4E-57 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 8 | 52 | 1.9E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 94 | 328 | 9.6E-87 | IPR027417 |
| SMART | SM00490 | helicmild6 | 377 | 457 | 3.9E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 137 | 340 | 1.9E-64 | IPR014001 |
| SMART | SM00456 | ww_5 | 12 | 45 | 1.4E-6 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 352 | 496 | 25.472027 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 11 | 45 | 11.4475 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 149 | 323 | 29.723377 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 118 | 146 | 10.537 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 269 | 277 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 17 | 43 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 584 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_015061071.1 | ATP-dependent RNA helicase-like protein DB10 [Solanum pennellii] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BZ37 | DEAD-box ATP-dependent RNA helicase 14 OS=Solanum chilense OX=4083 GN=EJD97_000429 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology