Basic Information
Locus ID:
gene-LOC132616891
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2742578 | 2751621 | - | gene-LOC132616891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 82,872.76 Da | 44.69 | 89.62 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 41 | 340 | 1.07558E-163 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 358 | 655 | 1.41547E-160 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 364 | 651 | 4.0E-25 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 364 | 656 | 2.88E-38 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 40 | 336 | 3.4E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 40 | 339 | 7.4E-34 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 359 | 656 | 2.7E-43 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 41 | 341 | 34.085808 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 357 | 656 | 29.432991 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_019224116.1 | PREDICTED: glycerophosphodiester phosphodiesterase GDPDL3-like [Nicotiana attenuata] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A314KY26 | glycerophosphodiester phosphodiesterase OS=Nicotiana attenuata OX=49451 GN=GDPDL4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology