Basic Information
Locus ID:
gene-LOC132616885
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 33459379 | 33480259 | + | gene-LOC132616885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 85,290.73 Da | 53.31 | 83.22 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 263 | 396 | 1.09042E-66 | - |
| CDD | cd17920 | DEXHc_RecQ | 62 | 262 | 4.4467E-106 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 283 | 385 | 8.5E-16 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 77 | 242 | 5.2E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 400 | 471 | 5.3E-12 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 112 | 408 | 1.65E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 263 | 489 | 9.4E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 37 | 262 | 9.7E-89 | IPR027417 |
| SMART | SM00487 | ultradead3 | 69 | 271 | 2.6E-32 | IPR014001 |
| SMART | SM00490 | helicmild6 | 306 | 387 | 2.8E-22 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 63 | 473 | 8.6E-146 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 81 | 255 | 24.460823 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 282 | 426 | 18.475971 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 689 | - | - |
| Coils | Coil | Coil | 546 | 566 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_015080657.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Solanum pennellii] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J6J8L2 | ATP-dependent DNA helicase OS=Nicotiana attenuata OX=49451 GN=RECQL3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology