HalophFGD

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Basic Information
Locus ID: gene-LOC132616880
Species & Taxonomic ID: Lycium barbarum & 112863
Genome Assembly: GCF_019175385.1
Description: Serine-threonine protein kinase, plant-type
Maps and Mapping Data
Chromosome Start End Strand ID
chr1 156722248 156734759 + gene-LOC132616880
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.63 145,284.81 Da 37.59 107.65 0.03
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF17919 RNase H-like domain found in reverse transcriptase 95 156 4.4E-14 IPR041577
Pfam PF08263 Leucine rich repeat N-terminal domain 197 236 2.3E-9 IPR013210
Pfam PF00560 Leucine Rich Repeat 851 873 1.1 IPR001611
Pfam PF00069 Protein kinase domain 1020 1289 2.3E-45 IPR000719
SUPERFAMILY SSF52058 L domain-like 240 326 3.74E-17 -
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 995 1290 4.51E-71 IPR011009
SUPERFAMILY SSF52047 RNI-like 577 928 5.18E-55 -
SUPERFAMILY SSF52047 RNI-like 334 682 1.1E-56 -
SUPERFAMILY SSF56672 DNA/RNA polymerases 1 189 1.78E-56 IPR043502
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 988 1093 2.4E-23 -
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 312 428 1.4E-26 IPR032675
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 475 576 3.5E-28 IPR032675
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1094 1298 7.8E-57 -
Gene3D G3DSA:3.30.70.270 - 42 126 9.0E-29 IPR043128
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 430 474 1.0E-9 IPR032675
Gene3D G3DSA:3.30.70.270 - 1 38 2.4E-6 IPR043128
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 198 311 1.5E-31 IPR032675
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 646 952 9.5E-83 IPR032675
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 577 645 2.6E-11 IPR032675
SMART SM00365 LRR_sd22_2 729 751 480.0 -
SMART SM00365 LRR_sd22_2 601 627 610.0 -
SMART SM00365 LRR_sd22_2 753 779 76.0 -
SMART SM00365 LRR_sd22_2 287 319 680.0 -
SMART SM00365 LRR_sd22_2 456 479 130.0 -
SMART SM00365 LRR_sd22_2 480 506 0.53 -
SMART SM00365 LRR_sd22_2 528 554 280.0 -
SMART SM00365 LRR_sd22_2 359 385 450.0 -
SMART SM00369 LRR_typ_2 729 752 210.0 IPR003591
SMART SM00369 LRR_typ_2 480 504 180.0 IPR003591
SMART SM00369 LRR_typ_2 383 407 18.0 IPR003591
SMART SM00369 LRR_typ_2 849 872 110.0 IPR003591
SMART SM00369 LRR_typ_2 753 776 44.0 IPR003591
SMART SM00220 serkin_6 1018 1299 4.9E-32 IPR000719
SMART SM00369 LRR_typ_2 335 359 120.0 IPR003591
SMART SM00369 LRR_typ_2 432 456 61.0 IPR003591
SMART SM00369 LRR_typ_2 873 897 410.0 IPR003591
SMART SM00369 LRR_typ_2 287 311 4.2 IPR003591
SMART SM00369 LRR_typ_2 777 801 160.0 IPR003591
SMART SM00369 LRR_typ_2 263 286 360.0 IPR003591
SMART SM00369 LRR_typ_2 552 576 220.0 IPR003591
ProSiteProfiles PS50011 Protein kinase domain profile. 1018 1299 35.778114 IPR000719
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 1024 1046 - IPR017441
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 1137 1149 - IPR008271
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)
KEGG Pathway
KO Term:
K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])
Pathway:
ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G47090.1 Leucine-rich repeat protein kinase family protein. 0
RefSeq XP_015081234.1 receptor kinase-like protein Xa21 [Solanum pennellii] 0
Swiss-Prot Q1MX30 Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 0
TrEMBL A0A1S4DS25 probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Nicotiana tabacum OX=4097 GN=LOC107832596 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Solanaceae Lycium barbarum 10 gene-LOC132613285, gene-LOC132613458, gene-LOC132613462 ...
gene-LOC132613463, gene-LOC132613494, gene-LOC132614590, gene-LOC132616014, gene-LOC132616880, gene-LOC132620071, gene-LOC132624955
Solanaceae Solanum chilense 1 SOLCI004842000
Solanaceae Solanum pennellii 2 gene-LOC107016360, gene-LOC107024787
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.