Basic Information
Locus ID:
gene-LOC132616875
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 26960667 | 26967850 | - | gene-LOC132616875 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 57,752.12 Da | 58.23 | 88.07 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 247 | 295 | 1.05161E-15 | - |
| Pfam | PF12906 | RING-variant domain | 247 | 294 | 1.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 243 | 298 | 3.62E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 302 | 9.8E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 246 | 295 | 1.3E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 239 | 301 | 18.846642 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 497 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009771006.1 | PREDICTED: uncharacterized protein LOC104221627 isoform X1 [Nicotiana sylvestris] | 0 |
| TrEMBL | A0A1U7W1D1 | uncharacterized protein LOC104221627 isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104221627 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology