Basic Information
Locus ID:
gene-LOC132616633
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ABC transporter C family member 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2400510 | 2406854 | + | gene-LOC132616633 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 167,991.30 Da | 33.20 | 104.19 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1256 | 1476 | 9.7223E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 622 | 822 | 8.01393E-91 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 930 | 1233 | 1.77205E-88 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 309 | 596 | 7.20062E-103 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 640 | 774 | 2.6E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 949 | 1175 | 5.3E-32 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 308 | 575 | 3.0E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1276 | 1423 | 2.5E-31 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1250 | 1490 | 2.28E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 299 | 607 | 1.15E-33 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 931 | 1240 | 3.4E-49 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 620 | 844 | 2.56E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 606 | 865 | 4.7E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1241 | 1494 | 1.7E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 896 | 1239 | 3.5E-56 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 290 | 604 | 6.3E-49 | IPR036640 |
| SMART | SM00382 | AAA_5 | 649 | 822 | 4.9E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1284 | 1469 | 1.4E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1258 | 1492 | 17.740562 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 622 | 845 | 22.495773 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 932 | 1176 | 34.472382 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 308 | 588 | 33.012108 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 747 | 761 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_010324277.1 | ABC transporter C family member 3 [Solanum lycopersicum] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3Q7HIQ0 | ABC-type xenobiotic transporter OS=Solanum lycopersicum OX=4081 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology