Basic Information
Locus ID:
gene-LOC132616567
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 80788162 | 80796648 | - | gene-LOC132616567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 54,979.78 Da | 69.28 | 60.26 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 384 | 441 | 3.5E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 211 | 266 | 4.4E-23 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 208 | 268 | 5.89E-25 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 375 | 443 | 2.48E-29 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 196 | 269 | 9.8E-27 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 367 | 444 | 1.7E-35 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 209 | 267 | 2.0E-34 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 383 | 442 | 4.0E-39 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 210 | 268 | 22.871077 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 378 | 443 | 35.829063 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 213 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_006350164.1 | PREDICTED: probable WRKY transcription factor 4 isoform X2 [Solanum tuberosum] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | M1A3W0 | DNA-binding protein OS=Solanum tuberosum OX=4113 GN=102593360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology