Basic Information
Locus ID:
gene-LOC132616100
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Rhamnogalacturonate lyase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 4273800 | 4297580 | + | gene-LOC132616100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 58,981.50 Da | 33.17 | 71.28 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 325 | 513 | 1.74814E-47 | - |
| CDD | cd10320 | RGL4_N | 1 | 178 | 9.73889E-48 | - |
| CDD | cd10316 | RGL4_M | 214 | 313 | 3.15455E-31 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 239 | 309 | 3.0E-22 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 1 | 84 | 3.7E-30 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 323 | 512 | 4.7E-48 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 24 | 181 | 9.73E-8 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 320 | 513 | 5.19E-40 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 211 | 312 | 8.63E-10 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 211 | 311 | 3.0E-10 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 3 | 186 | 6.7E-9 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 320 | 513 | 3.1E-13 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_049345613.1 | uncharacterized protein LOC125810131 [Solanum verrucosum] | 0 |
| A1D144 | Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rglB PE=3 SV=1 | 0 | |
| TrEMBL | A0A0X7YFV2 | rhamnogalacturonan endolyase OS=Solanum tuberosum OX=4113 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology