Basic Information
Locus ID:
gene-LOC132616014
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Serine-threonine protein kinase, plant-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 124487959 | 124492971 | + | gene-LOC132616014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 125,423.82 Da | 33.79 | 110.11 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 662 | 716 | 1.6E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 169 | 189 | 1.4 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 853 | 1120 | 6.9E-43 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 67 | 1.5E-9 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 408 | 761 | 3.45E-59 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 827 | 1122 | 1.18E-68 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 76 | 471 | 1.33E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 140 | 5.4E-32 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 819 | 924 | 1.1E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 212 | 405 | 4.2E-55 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 141 | 211 | 4.2E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 478 | 780 | 1.8E-84 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 925 | 1131 | 5.4E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 406 | 477 | 1.6E-15 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 287 | 310 | 93.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 584 | 610 | 130.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 311 | 337 | 110.0 | - |
| SMART | SM00220 | serkin_6 | 849 | 1129 | 1.9E-26 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 263 | 286 | 590.0 | - |
| SMART | SM00369 | LRR_typ_2 | 118 | 142 | 4.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 704 | 727 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 287 | 310 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 408 | 432 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 311 | 335 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 166 | 190 | 160.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 214 | 240 | 220.0 | - |
| SMART | SM00369 | LRR_typ_2 | 680 | 703 | 89.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 359 | 383 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 214 | 238 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 608 | 632 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 584 | 607 | 59.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 682 | 703 | 7.288416 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 849 | 1130 | 34.788734 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 855 | 877 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 968 | 980 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47580.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_049392508.1 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Solanum stenotomum] | 0 |
| Q1MX30 | Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 | 0 | |
| TrEMBL | M1A662 | Protein kinase domain-containing protein OS=Solanum tuberosum OX=4113 GN=107061290 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 10 | gene-LOC132613285, gene-LOC132613458, gene-LOC132613462 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004842000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016360, gene-LOC107024787 |