Basic Information
Locus ID:
gene-LOC132615947
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 8205385 | 8212027 | + | gene-LOC132615947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 68,067.51 Da | 40.35 | 104.61 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 248 | 290 | 8.80583E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 371 | 410 | 2.1E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 244 | 314 | 2.1E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 454 | 492 | 2.0E-6 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 341 | 615 | 2.34E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 244 | 319 | 7.32E-31 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 117 | 1.2E-9 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 242 | 317 | 5.6E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 333 | 618 | 1.1E-57 | IPR011989 |
| SMART | SM00185 | arm_5 | 494 | 534 | 110.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 247 | 310 | 1.4E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 371 | 411 | 3.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 535 | 575 | 130.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 453 | 493 | 0.07 | IPR000225 |
| SMART | SM00185 | arm_5 | 412 | 452 | 0.095 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 243 | 317 | 44.61063 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 505 | 542 | 8.7324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 423 | 465 | 9.4674 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 382 | 424 | 14.087399 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_031118758.1 | U-box domain-containing protein 14 [Ipomoea triloba] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2XZC3 | RING-type E3 ubiquitin transferase OS=Capsicum annuum OX=4072 GN=LOC107850757 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology