Basic Information
Locus ID:
gene-LOC132615832
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 13684003 | 13709897 | + | gene-LOC132615832 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 133,961.72 Da | 43.37 | 80.51 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 195 | 554 | 7.04586E-164 | - |
| CDD | cd00121 | MATH | 54 | 177 | 1.08776E-38 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 915 | 1125 | 3.5E-57 | IPR029346 |
| Pfam | PF00917 | MATH domain | 59 | 178 | 7.6E-20 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 653 | 905 | 2.5E-76 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 197 | 484 | 1.7E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 192 | 578 | 1.51E-94 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 185 | 1.96E-41 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 713 | 830 | 1.9E-42 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 831 | 928 | 3.1E-27 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 193 | 553 | 7.0E-88 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 51 | 192 | 3.9E-51 | IPR008974 |
| SMART | SM00061 | math_3 | 54 | 158 | 6.9E-20 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 52 | 177 | 39.670341 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 197 | 501 | 38.930225 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 437 | 454 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 198 | 213 | - | IPR018200 |
| Coils | Coil | Coil | 565 | 592 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_009614228.1 | ubiquitin carboxyl-terminal hydrolase 12-like [Nicotiana tomentosiformis] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4B5D2 | ubiquitinyl hydrolase 1 OS=Nicotiana tabacum OX=4097 GN=LOC107804674 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology