Basic Information
Locus ID:
gene-LOC132615241
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1454589 | 1455164 | - | gene-LOC132615241 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 21,819.92 Da | 46.89 | 79.58 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 127 | 171 | 3.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 177 | 2.86E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 178 | 5.9E-19 | IPR013083 |
| SMART | SM00744 | ringv_2 | 128 | 171 | 0.0096 | IPR011016 |
| SMART | SM00184 | ring_2 | 129 | 170 | 4.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 171 | 13.28594 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18760.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_047257471.1 | E3 ubiquitin-protein ligase Praja-1-like [Capsicum annuum] | 0 |
| F1QB30 | E3 ubiquitin-protein ligase AMFR OS=Danio rerio OX=7955 GN=amfra PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3Y9U4 | uncharacterized protein LOC107773940 OS=Nicotiana tabacum OX=4097 GN=LOC107773940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615241 |
| Solanaceae | Solanum chilense | 2 | SOLCI006664000, SOLCI007493300 |