Basic Information
Locus ID:
gene-LOC132615205
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 114159358 | 114168181 | + | gene-LOC132615205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 38,409.17 Da | 47.21 | 93.77 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 53 | 101 | 4.8485E-16 | - |
| Pfam | PF12906 | RING-variant domain | 53 | 100 | 6.6E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 105 | 1.52E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 108 | 1.5E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 52 | 101 | 1.1E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 45 | 107 | 20.939978 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_047268406.1 | uncharacterized protein LOC107870198 [Capsicum annuum] | 0 |
| TrEMBL | A0A2G3CE02 | RING-CH-type domain-containing protein OS=Capsicum chinense OX=80379 GN=BC332_12663 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology