Basic Information
Locus ID:
gene-LOC132614968
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 124326728 | 124329254 | - | gene-LOC132614968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 57,659.70 Da | 40.41 | 74.02 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 142 | 185 | 2.39585E-17 | - |
| Pfam | PF13639 | Ring finger domain | 142 | 185 | 6.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 191 | 1.89E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 193 | 2.3E-22 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 139 | 192 | 0.0069 | - |
| SMART | SM00184 | ring_2 | 143 | 184 | 2.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 143 | 185 | 12.917115 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 237 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016572070.1 | RING-H2 finger protein ATL47 [Capsicum annuum] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U8GLB9 | RING-type E3 ubiquitin transferase OS=Capsicum annuum OX=4072 GN=LOC107870152 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology