HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene-LOC132614590
Species & Taxonomic ID: Lycium barbarum & 112863
Genome Assembly: GCF_019175385.1
Description: Serine-threonine protein kinase, plant-type
Maps and Mapping Data
Chromosome Start End Strand ID
chr10 124387049 124390817 + gene-LOC132614590
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.97 126,403.18 Da 35.24 108.65 0.03
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF08263 Leucine rich repeat N-terminal domain 28 67 1.2E-7 IPR013210
Pfam PF00560 Leucine Rich Repeat 435 457 0.57 IPR001611
Pfam PF13855 Leucine rich repeat 167 227 2.0E-6 IPR001611
Pfam PF00069 Protein kinase domain 854 1121 1.3E-43 IPR000719
Pfam PF13855 Leucine rich repeat 542 598 3.1E-7 IPR001611
Pfam PF00560 Leucine Rich Repeat 683 705 0.04 IPR001611
SUPERFAMILY SSF52058 L domain-like 71 157 4.49E-16 -
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 828 1123 3.01E-69 IPR011009
SUPERFAMILY SSF52047 RNI-like 165 513 1.57E-59 -
SUPERFAMILY SSF52047 RNI-like 408 758 2.2E-59 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 926 1132 3.6E-55 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 820 925 4.5E-23 -
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 26 162 1.9E-32 IPR032675
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 261 370 4.1E-28 IPR032675
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 371 478 1.5E-25 IPR032675
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 479 782 3.4E-86 IPR032675
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 163 260 1.1E-23 IPR032675
SMART SM00369 LRR_typ_2 118 142 4.2 IPR003591
SMART SM00369 LRR_typ_2 214 238 15.0 IPR003591
SMART SM00369 LRR_typ_2 166 190 32.0 IPR003591
SMART SM00369 LRR_typ_2 287 311 76.0 IPR003591
SMART SM00369 LRR_typ_2 681 704 100.0 IPR003591
SMART SM00369 LRR_typ_2 409 433 230.0 IPR003591
SMART SM00369 LRR_typ_2 705 729 100.0 IPR003591
SMART SM00365 LRR_sd22_2 359 386 800.0 -
SMART SM00369 LRR_typ_2 359 384 210.0 IPR003591
SMART SM00365 LRR_sd22_2 311 337 31.0 -
SMART SM00365 LRR_sd22_2 409 441 350.0 -
SMART SM00365 LRR_sd22_2 263 286 370.0 -
SMART SM00365 LRR_sd22_2 214 240 100.0 -
SMART SM00365 LRR_sd22_2 287 310 240.0 -
SMART SM00369 LRR_typ_2 561 584 39.0 IPR003591
SMART SM00365 LRR_sd22_2 585 611 130.0 -
SMART SM00369 LRR_typ_2 585 608 46.0 IPR003591
SMART SM00220 serkin_6 850 1130 8.9E-31 IPR000719
SMART SM00369 LRR_typ_2 609 633 380.0 IPR003591
ProSiteProfiles PS50011 Protein kinase domain profile. 850 1131 34.308178 IPR000719
ProSiteProfiles PS51450 Leucine-rich repeat profile. 683 704 7.172906 IPR001611
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 969 981 - IPR008271
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 856 878 - IPR017441
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)
KEGG Pathway
KO Term:
K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])
Pathway:
ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G47090.1 Leucine-rich repeat protein kinase family protein. 0
RefSeq XP_009618499.1 receptor kinase-like protein Xa21 [Nicotiana tomentosiformis] 0
Swiss-Prot Q1MX30 Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 0
TrEMBL M1BB90 Protein kinase domain-containing protein OS=Solanum tuberosum OX=4113 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Solanaceae Lycium barbarum 10 gene-LOC132613285, gene-LOC132613458, gene-LOC132613462 ...
gene-LOC132613463, gene-LOC132613494, gene-LOC132614590, gene-LOC132616014, gene-LOC132616880, gene-LOC132620071, gene-LOC132624955
Solanaceae Solanum chilense 1 SOLCI004842000
Solanaceae Solanum pennellii 2 gene-LOC107016360, gene-LOC107024787
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.