Basic Information
Locus ID:
gene-LOC132614491
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 10533511 | 10537428 | + | gene-LOC132614491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 48,424.02 Da | 43.29 | 87.95 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 231 | 341 | 3.1E-7 | IPR006527 |
| Pfam | PF00646 | F-box domain | 27 | 65 | 1.2E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 78 | 3.27E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 25 | 78 | 2.6E-10 | - |
| SMART | SM00256 | fbox_2 | 31 | 71 | 3.1E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 138 | 333 | 9.4E-20 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 25 | 71 | 12.33237 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21120.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_016498199.1 | PREDICTED: F-box protein At3g07870-like isoform X1 [Nicotiana tabacum] | 0 |
| TrEMBL | A0A1S4CAN7 | F-box protein At3g07870-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107816965 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1496, gene_23374 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G015300, COCNU_07G015310 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8264 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1529, evm.TU.LG22.421 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.534, evm.TU.Scaffold_5_RagTag.1577 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-12069, nbisL1-mrna-12143, nbisL1-mrna-12163 ... |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.160 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15516, nbisL1-mrna-23528 |
| Solanaceae | Lycium barbarum | 8 | gene-LOC132600105, gene-LOC132602587, gene-LOC132614123 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000612100, SOLCI004908700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107003485, gene-LOC107004245, gene-LOC107004251 |