Basic Information
Locus ID:
gene-LOC132614472
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 111836406 | 111842821 | + | gene-LOC132614472 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 28,489.97 Da | 49.30 | 82.42 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01582 | TIR domain | 18 | 189 | 1.9E-33 | IPR000157 |
| SUPERFAMILY | SSF52200 | Toll/Interleukin receptor TIR domain | 7 | 161 | 5.1E-32 | IPR035897 |
| Gene3D | G3DSA:3.40.50.10140 | - | 16 | 189 | 4.8E-53 | IPR035897 |
| SMART | SM00255 | till_3 | 17 | 158 | 1.2E-31 | IPR000157 |
| ProSiteProfiles | PS50104 | TIR domain profile. | 16 | 185 | 33.582367 | IPR000157 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04015 (Rap1 signaling pathway)
map04015 (Rap1 signaling pathway)
ko04016 (MAPK signaling pathway - plant)
map04016 (MAPK signaling pathway - plant)
ko04020 (Calcium signaling pathway)
map04020 (Calcium signaling pathway)
ko04022 (cGMP-PKG signaling pathway)
map04022 (cGMP-PKG signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04070 (Phosphatidylinositol signaling system)
map04070 (Phosphatidylinositol signaling system)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
ko04745 (Phototransduction - fly)
map04745 (Phototransduction - fly)
ko04750 (Inflammatory mediator regulation of TRP channels)
map04750 (Inflammatory mediator regulation of TRP channels)
ko04916 (Melanogenesis)
map04916 (Melanogenesis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17680.2 | - | 0 |
| RefSeq | XP_030933178.1 | TMV resistance protein N-like [Quercus lobata] | 0 |
| Q40392 | TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BEU7 | Putative TMV resistance protein N-like OS=Davidia involucrata OX=16924 GN=Din_036840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology