Basic Information
Locus ID:
gene-LOC132614398
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
HRDC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 8474534 | 8476064 | - | gene-LOC132614398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 12,802.33 Da | 35.18 | 79.05 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00570 | HRDC domain | 15 | 75 | 5.1E-9 | IPR002121 |
| SUPERFAMILY | SSF47819 | HRDC-like | 9 | 83 | 3.14E-6 | IPR010997 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 9 | 78 | 1.8E-11 | IPR044876 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 6 | 85 | 13.427504 | IPR002121 |
| Coils | Coil | Coil | 2 | 22 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.2 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_049376609.1 | ATP-dependent DNA helicase Q-like 2 isoform X4 [Solanum stenotomum] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7WDH6 | mediator of RNA polymerase II transcription subunit 34-like OS=Nicotiana sylvestris OX=4096 GN=LOC104222700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology