Basic Information
Locus ID:
gene-LOC132614125
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 24236646 | 24242273 | - | gene-LOC132614125 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 106,497.06 Da | 32.30 | 101.93 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 684 | 950 | 2.9E-44 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 77 | 1.2E-7 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 346 | 366 | 1.0 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 226 | 248 | 0.62 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 346 | 605 | 1.08E-48 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 84 | 406 | 2.04E-58 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 676 | 952 | 6.74E-71 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 649 | 757 | 4.9E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 486 | 607 | 1.1E-32 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 758 | 963 | 2.0E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 290 | 384 | 2.0E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 385 | 485 | 8.4E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 190 | 3.1E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 191 | 289 | 2.9E-32 | IPR032675 |
| SMART | SM00220 | serkin_6 | 682 | 929 | 1.5E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 682 | 960 | 36.922966 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 802 | 814 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_006356981.1 | PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Solanum tuberosum] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | M1A707 | Receptor protein kinase CLAVATA1 OS=Solanum tuberosum OX=4113 GN=102585300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology