Basic Information
Locus ID:
gene-LOC132614035
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 114357090 | 114358874 | + | gene-LOC132614035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 40,114.86 Da | 65.85 | 61.41 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 176 | 217 | 4.74886E-23 | - |
| Pfam | PF13639 | Ring finger domain | 176 | 217 | 2.9E-9 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 3 | 35 | 1.1E-11 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 239 | 355 | 1.7E-30 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 223 | 3.53E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 223 | 1.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 176 | 216 | 4.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 176 | 217 | 11.928664 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 64 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_049390210.1 | probable E3 ubiquitin-protein ligase RHC2A [Solanum stenotomum] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0V0IN29 | RING-type E3 ubiquitin transferase OS=Solanum chacoense OX=4108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology