Basic Information
Locus ID:
gene-LOC132614025
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
AMSH-like ubiquitin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 90185926 | 90193013 | + | gene-LOC132614025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 28,266.77 Da | 53.07 | 80.20 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 78 | 254 | 2.07218E-86 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 79 | 184 | 6.9E-17 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 81 | 209 | 3.53E-18 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 61 | 254 | 2.1E-63 | - |
| SMART | SM00232 | pad1_6 | 80 | 208 | 9.2E-8 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 81 | 209 | 25.837927 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 74 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_006350278.1 | PREDICTED: AMSH-like ubiquitin thioesterase 2 isoform X1 [Solanum tuberosum] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U7XAR7 | AMSH-like ubiquitin thioesterase 2 isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104236864 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology