Basic Information
Locus ID:
gene-LOC132613958
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 14318697 | 14320477 | + | gene-LOC132613958 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 49,277.30 Da | 42.53 | 96.35 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 33 | 75 | 2.55647E-23 | - |
| Pfam | PF04564 | U-box domain | 29 | 101 | 2.7E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 134 | 416 | 3.29E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 105 | 5.1E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 121 | 416 | 3.0E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 106 | 2.4E-31 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 32 | 95 | 2.7E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 28 | 102 | 40.055096 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_016549661.1 | U-box domain-containing protein 21-like [Capsicum annuum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G3B1L7 | RING-type E3 ubiquitin transferase OS=Capsicum chinense OX=80379 GN=BC332_30154 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology