Basic Information
Locus ID:
gene-LOC132613496
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 112177452 | 112189606 | + | gene-LOC132613496 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 95,832.99 Da | 43.06 | 91.23 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 270 | 299 | 1.2E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 647 | 670 | 1.8E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 675 | 705 | 3.2E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 711 | 738 | 0.067 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 545 | 565 | 0.22 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 748 | 773 | 0.69 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 343 | 369 | 0.14 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 571 | 615 | 3.6E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 67 | 113 | 3.4E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 167 | 217 | 3.9E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 371 | 398 | 1.8E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 444 | 466 | 0.079 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 472 | 501 | 3.3E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 240 | 267 | 0.0024 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 69 | 168 | 1.41E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 523 | 622 | 1.3E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 315 | 425 | 6.0E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 426 | 522 | 5.4E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 3 | 116 | 5.6E-13 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 672 | 852 | 2.1E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 232 | 314 | 7.7E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 117 | 225 | 1.6E-22 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 143 | 170 | 1.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 675 | 708 | 2.1E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 240 | 266 | 0.0018 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 647 | 671 | 0.0017 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 69 | 102 | 2.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 472 | 505 | 9.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 574 | 608 | 2.3E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 270 | 302 | 7.4E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 572 | 606 | 11.388848 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 137 | 171 | 9.854266 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 673 | 707 | 10.446177 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 66 | 101 | 9.119859 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 268 | 302 | 11.268274 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 369 | 403 | 10.117337 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 470 | 504 | 10.588674 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39620.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_015071856.1 | pentatricopeptide repeat-containing protein At2g39620 [Solanum pennellii] | 0 |
| O80647 | Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E33 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6N2AWX2 | DYW_deaminase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_025644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24434 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033616 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g037410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19889, Sbi_jg44652 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17347 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024039 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63698, Sgl68200 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000021560, gene:ENSEOMG00000050726 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0009780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30175040 |
| Apiaceae | Apium graveolens | 1 | Ag10G01116 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G000840 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.46.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28911 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016248m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g025470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0739 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g07690 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g02680 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05287 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1452, evm.TU.LG05.1977 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1706 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26022 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7668 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4515, nbisL1-mrna-4516 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.357 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17549 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9474 |
| Salicaceae | Populus euphratica | 1 | populus_peu06399 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613496, gene-LOC132615578 |
| Solanaceae | Solanum chilense | 1 | SOLCI007470700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015926 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2306_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0915 |
| Zosteraceae | Zostera marina | 1 | Zosma06g27790.v3.1 |