Basic Information
Locus ID:
gene-LOC132613462
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 124664236 | 124668684 | - | gene-LOC132613462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 134,010.16 Da | 39.68 | 106.82 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 682 | 704 | 0.058 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 67 | 4.4E-10 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 119 | 179 | 2.2E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 853 | 1117 | 2.2E-42 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 826 | 1117 | 1.78E-66 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 407 | 750 | 6.67E-56 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 165 | 471 | 4.16E-54 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 45 | 203 | 5.44E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 479 | 784 | 8.0E-84 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 405 | 478 | 1.8E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 141 | 6.2E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 213 | 9.2E-16 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 809 | 924 | 9.0E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 214 | 404 | 4.7E-50 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 925 | 1139 | 2.6E-53 | - |
| SMART | SM00365 | LRR_sd22_2 | 311 | 337 | 130.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 359 | 385 | 270.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 408 | 440 | 77.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 680 | 701 | 210.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 608 | 629 | 790.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 560 | 586 | 360.0 | - |
| SMART | SM00369 | LRR_typ_2 | 608 | 632 | 110.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 214 | 240 | 220.0 | - |
| SMART | SM00369 | LRR_typ_2 | 118 | 142 | 3.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 311 | 335 | 250.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 849 | 1124 | 2.2E-23 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 408 | 432 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 680 | 703 | 43.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 560 | 584 | 44.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 359 | 383 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 94 | 117 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 214 | 238 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 704 | 732 | 230.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 682 | 703 | 7.696554 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 849 | 1133 | 32.541428 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 968 | 980 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 855 | 877 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47580.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_016515939.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Nicotiana tabacum] | 0 |
| Q1MX30 | Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4DS25 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Nicotiana tabacum OX=4097 GN=LOC107832596 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 10 | gene-LOC132613285, gene-LOC132613458, gene-LOC132613462 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004842000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016360, gene-LOC107024787 |