Basic Information
Locus ID:
gene-LOC132613458
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Serine-threonine protein kinase, plant-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 124471796 | 124475369 | + | gene-LOC132613458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 126,100.39 Da | 38.39 | 108.99 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 67 | 1.2E-9 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 854 | 1121 | 4.2E-40 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 410 | 470 | 4.0E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 491 | 512 | 1.5 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 683 | 704 | 0.075 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 408 | 745 | 1.26E-57 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 76 | 399 | 1.33E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 826 | 1123 | 7.52E-66 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 478 | 785 | 4.5E-81 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 141 | 213 | 4.9E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 140 | 7.4E-32 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 820 | 925 | 1.0E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 926 | 1132 | 1.2E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 217 | 405 | 1.1E-46 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 406 | 477 | 1.1E-15 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 384 | 408 | 310.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 850 | 1130 | 8.6E-18 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 214 | 240 | 37.0 | - |
| SMART | SM00369 | LRR_typ_2 | 118 | 142 | 4.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 409 | 433 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 166 | 190 | 43.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 681 | 704 | 43.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 214 | 238 | 5.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 561 | 585 | 52.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 263 | 287 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 609 | 633 | 110.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 359 | 386 | 490.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 311 | 337 | 64.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 681 | 702 | 210.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 585 | 611 | 200.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 433 | 459 | 370.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 683 | 704 | 7.696554 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 850 | 1131 | 31.707521 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 969 | 981 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 856 | 878 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47580.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_016572085.2 | receptor kinase-like protein Xa21 [Capsicum annuum] | 0 |
| Q1MX30 | Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8GTG3 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 OS=Capsicum annuum OX=4072 GN=LOC107870155 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 10 | gene-LOC132613285, gene-LOC132613458, gene-LOC132613462 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004842000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016360, gene-LOC107024787 |