Basic Information
Locus ID:
gene-LOC132613285
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Serine-threonine protein kinase, plant-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 108344011 | 108347548 | + | gene-LOC132613285 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 124,280.16 Da | 37.63 | 111.01 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 704 | 726 | 0.13 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 851 | 1111 | 4.4E-49 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 513 | 571 | 3.3E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 165 | 224 | 2.6E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 583 | 643 | 5.8E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 64 | 3.9E-9 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 405 | 747 | 9.42E-62 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 162 | 470 | 3.45E-57 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 825 | 1113 | 3.91E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 70 | 155 | 1.53E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 817 | 922 | 9.9E-25 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 308 | 403 | 3.9E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 140 | 4.0E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 404 | 473 | 1.4E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 474 | 783 | 7.5E-90 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 141 | 255 | 2.1E-29 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 923 | 1123 | 4.9E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 256 | 307 | 2.3E-10 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 606 | 630 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 454 | 477 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 211 | 234 | 7.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 702 | 725 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 678 | 701 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 558 | 582 | 5.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 534 | 557 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 260 | 284 | 9.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 163 | 186 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 115 | 139 | 5.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 406 | 430 | 19.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 702 | 723 | 740.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 406 | 432 | 730.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 308 | 334 | 170.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 284 | 307 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 260 | 283 | 50.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 582 | 608 | 540.0 | - |
| SMART | SM00220 | serkin_6 | 847 | 1120 | 1.1E-39 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 187 | 213 | 30.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 534 | 566 | 460.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 165 | 186 | 7.411628 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 847 | 1121 | 36.018391 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 966 | 978 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 853 | 875 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 702 | 715 | 1.7E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 166 | 179 | 1.7E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47090.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_009786455.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Nicotiana sylvestris] | 0 |
| Q1MX30 | Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7XJ08 | LRR receptor-like serine/threonine-protein kinase EFR OS=Nicotiana sylvestris OX=4096 GN=LOC104234566 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 10 | gene-LOC132613285, gene-LOC132613458, gene-LOC132613462 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004842000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016360, gene-LOC107024787 |