halophFGD

Basic Information

Locus ID: gene-LOC132612943

Species & Taxonomic ID: Lycium barbarum & 112863

Genome Assembly: GCF_019175385.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	37710639	37711763	-	gene-LOC132612943

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.87	43,519.85 Da	46.85	53.48	-1.56

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	190	218	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	352	374	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	166	227	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	245	299	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	166	189	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	102	121	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	245	374	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	107	121	-	-
Coils	Coil	Coil	58	78	-	-
Coils	Coil	Coil	161	181	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_018632189.1	uncharacterized protein LOC108948042 [Nicotiana tomentosiformis]	0
TrEMBL	A0A0V0GE92	Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.681.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g04130
Solanaceae	Lycium barbarum	44	gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... gene-LOC132601883, gene-LOC132601893, gene-LOC132601922, gene-LOC132606002, gene-LOC132607734, gene-LOC132609505, gene-LOC132610402, gene-LOC132611827, gene-LOC132612098, gene-LOC132612101, gene-LOC132612132, gene-LOC132612161, gene-LOC132612301, gene-LOC132612811, gene-LOC132612943, gene-LOC132613748, gene-LOC132615817, gene-LOC132617405, gene-LOC132619559, gene-LOC132619608, gene-LOC132620049, gene-LOC132623978, gene-LOC132624193, gene-LOC132624351, gene-LOC132624353, gene-LOC132624363, gene-LOC132628281, gene-LOC132628294, gene-LOC132628470, gene-LOC132629150, gene-LOC132631066, gene-LOC132631437, gene-LOC132631524, gene-LOC132631534, gene-LOC132637239, gene-LOC132637284, gene-LOC132639155, gene-LOC132639331, gene-LOC132639829, gene-LOC132643879, gene-LOC132644615
Solanaceae	Solanum chilense	37	SOLCI000177100, SOLCI000563900, SOLCI001032000 ... SOLCI001267600, SOLCI001302000, SOLCI001561300, SOLCI001623700, SOLCI001652900, SOLCI002142100, SOLCI002298300, SOLCI002435500, SOLCI002634400, SOLCI002750700, SOLCI003008500, SOLCI003121300, SOLCI003335900, SOLCI003420000, SOLCI003569900, SOLCI003899300, SOLCI003914900, SOLCI004089200, SOLCI004107200, SOLCI004164900, SOLCI004492500, SOLCI004715900, SOLCI004719400, SOLCI004929300, SOLCI004976100, SOLCI005111200, SOLCI005325900, SOLCI005500300, SOLCI006148400, SOLCI006625600, SOLCI006891100, SOLCI007303800, SOLCI007398600, SOLCI007411400
Solanaceae	Solanum pennellii	3	gene-LOC107022842, gene-LOC114076821, gene-LOC114077933