Basic Information
Locus ID:
gene-LOC132612859
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 25227026 | 25227816 | + | gene-LOC132612859 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 29,288.22 Da | 42.85 | 70.42 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 61 | 105 | 2.17401E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 60 | 108 | 9.1E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 116 | 1.25E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 121 | 2.6E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 63 | 103 | 9.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 63 | 104 | 12.902362 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 78 | 87 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 148 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006338276.1 | PREDICTED: E3 ubiquitin-protein ligase RNF185-like [Solanum tuberosum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | M1AMT0 | RING-type E3 ubiquitin transferase OS=Solanum tuberosum OX=4113 GN=102582225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology