Basic Information
Locus ID:
gene-LOC132612638
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5596474 | 5598205 | - | gene-LOC132612638 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 46,112.92 Da | 59.57 | 77.71 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 160 | 203 | 2.64766E-18 | - |
| Pfam | PF13639 | Ring finger domain | 160 | 203 | 3.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 214 | 2.47E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 212 | 1.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 161 | 202 | 2.3E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 157 | 211 | 0.0065 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 161 | 203 | 12.799091 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 406 | - | - |
| Coils | Coil | Coil | 399 | 406 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047256601.1 | RING-H2 finger protein ATL54 [Capsicum annuum] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U8EX83 | RING-type E3 ubiquitin transferase OS=Capsicum annuum OX=4072 GN=LOC107851332 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology