Basic Information
Locus ID:
gene-LOC132612614
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 103933831 | 103947285 | - | gene-LOC132612614 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 43,000.76 Da | 64.55 | 78.33 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.41266E-31 | - |
| Pfam | PF09280 | XPC-binding domain | 287 | 342 | 2.2E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 369 | 404 | 6.1E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 183 | 218 | 1.7E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.0E-18 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 5.86E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 351 | 411 | 9.33E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 163 | 224 | 3.19E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 283 | 348 | 2.75E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 173 | 223 | 4.4E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 361 | 408 | 9.7E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 277 | 343 | 1.1E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.3E-28 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.6E-22 | IPR000626 |
| SMART | SM00727 | CBM | 285 | 328 | 5.3E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 180 | 220 | 9.6E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 369 | 406 | 3.6E-9 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 412 | 5.7E-114 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 366 | 407 | 14.908409 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.934587 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 179 | 221 | 11.992661 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 380 | 394 | 5.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 313 | 335 | 5.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 363 | 379 | 5.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 395 | 410 | 5.5E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 113 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_015073813.1 | ubiquitin receptor RAD23c-like [Solanum pennellii] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U7XWG4 | Ubiquitin receptor RAD23 OS=Nicotiana sylvestris OX=4096 GN=LOC104238574 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology