Basic Information
Locus ID:
gene-LOC132612596
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 9695483 | 9701985 | + | gene-LOC132612596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 95,869.30 Da | 69.93 | 63.42 | -1.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 783 | 823 | 8.02472E-22 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 781 | 828 | 1.4E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 777 | 829 | 2.47E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 767 | 834 | 3.4E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 784 | 823 | 11.087743 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 147 | - | - |
| Coils | Coil | Coil | 714 | 734 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_019235502.1 | PREDICTED: uncharacterized protein LOC109215844 [Nicotiana attenuata] | 0 |
| Q24746 | Protein neuralized OS=Drosophila virilis OX=7244 GN=neur PE=4 SV=1 | 0 | |
| TrEMBL | A0A1J6KSD7 | RING-type domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_30766 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology