Basic Information
Locus ID:
gene-LOC132612366
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 119691925 | 119695326 | - | gene-LOC132612366 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 50,429.31 Da | 50.57 | 75.32 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 154 | 423 | 4.14062E-41 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 171 | 225 | 7.1E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 390 | 423 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 250 | 285 | 7.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 338 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 115 | 424 | 1.28E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 79 | 426 | 6.4E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 163 | 202 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 381 | 56.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 423 | 2.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 338 | 0.0087 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 242 | 0.99 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 285 | 3.7E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 391 | 424 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 170 | 211 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 253 | 287 | 11.207411 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 170 | 207 | 8.597424 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 391 | 424 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 253 | 294 | 13.917108 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 410 | 424 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_004244418.1 | cell division cycle 20.2, cofactor of APC complex isoform X1 [Solanum lycopersicum] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | M1BL19 | Cell division control 20 OS=Solanum tuberosum OX=4113 GN=102580347 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology